IGVFFI2985VSGE

released

validated

File Set

IGVFDS9728LNRU(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinA-PCR2_Rep1_S117

md5sum

db3d4f1adfe1187f664e729ccd89f113

Content MD5sum

b2454c8224b4af5de018ff286ee64845

File Size

16 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinA-PCR2-Rep1_S117_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

CCAGTTAG:TTGA

Average Read Length

Read Count

823844

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM3056RYCY

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library