IGVFFI2976CARS

released

validated

File Set

IGVFDS0508ERUQ(scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jay-shendure:CRISPRa_singlecell_K562_VPR_sequence_exprs_10Xlane2_seqlane1_R1

md5sum

265188727186344e7026a3ce3b7ce9c9

Content MD5sum

269716c800cd34d0691d22f6367e914a

File Size

3.1 GB

Submitted File Name

/net/shendure/vol10/www/content/members/CRISPRa_QTL_website/public/data/K562_data/sequencing_data/cellranger_mkfastq_output/outs/fastq_path/AAAHG2HHV/VPR_exprs_2/VPR_exprs_2_S4_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NextSeq 2000

Sequencing Run

Flowcell ID

AAAHG2HHV

Lane

Sequencing Kit

NextSeq 1000/2000 P3 Reagent Kit

Illumina Read Type

Average Read Length

Read Count

144716774

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM9542NUGS

InVitroSystem

K562

K562 cell line (cellular sub pool: 10Xlane2), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library