IGVFFI2973ECIP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3082IAKC(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G1_P007_L003_R3

md5sum

28d4ca6b62f040559b3df2aff80e48a6

Content MD5sum

db1a99628e46acfea9e963931e416c38

File Size

12 GB

Submitted File Name

Multiome_ATAC_X010_G1_L001_P007_S29_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

240872937

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2403GODW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples