IGVFFI2954HOIC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2292VIWJ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X013_G3_P011_L003_R3

md5sum

608311bb461609917062caf5b8b5df71

Content MD5sum

65b97fa22343eeaac8dcf5b96e7cfaf2

File Size

7.3 GB

Submitted File Name

Multiome_ATAC_X013_G3_L003_P011_S21_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

221184371

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0356ZQLC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples