IGVFFI2953KBTW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2046NYYD(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G5_P007_L003_R2

md5sum

d7f7960479b982abbcb704307cea4b4f

Content MD5sum

38b25acdbc0c82906ec7d099c8a574e0

File Size

3.6 GB

Submitted File Name

Multiome_ATAC_X010_G5_L005_P007_S33_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

208826813

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9348OQXF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples