IGVFFI2950PVUT

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2950PVUT/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2950PVUT",
10    "aliases": [
11        "leif-ludwig:measurement2304513004_scATAC_R2"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "e084be450bc788460d05d07022658af0",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-06T14:59:52.244357+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS2461OEPS/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS2461OEPS",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/primary-cells/IGVFSM0371BTPA/",
44                "@type": [
45                    "PrimaryCell",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM0371BTPA",
51                "classifications": [
52                    "primary cell"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/CL_2000001/",
57                        "status": "released",
58                        "term_name": "peripheral blood mononuclear cell"
59                    }
60                ],
61                "status": "preview",
62                "summary": "Homo sapiens (female, 65 years) peripheral blood mononuclear cell",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "preview",
67        "summary": "10x multiome with scMito-seq"
68    },
69    "file_size": 6898764997,
70    "flowcell_id": "22T3LCLT3",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI2950PVUT/@@download/IGVFFI2950PVUT.fastq.gz",
73    "illumina_read_type": "R2",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/leif-ludwig/",
78        "title": "Leif Ludwig, MDC"
79    },
80    "loci_list_for": [],
81    "maximum_read_length": 16,
82    "md5sum": "e978aa5cb2825f08863c66d13e645042",
83    "mean_read_length": 16,
84    "minimum_read_length": 16,
85    "quality_metrics": [],
86    "read_count": 456931126,
87    "read_names": [
88        "Barcode index"
89    ],
90    "s3_uri": "s3://igvf-restricted-files/2025/03/06/d31c62b9-21f2-4932-ba0a-9d301045c5f8/IGVFFI2950PVUT.fastq.gz",
91    "schema_version": "15",
92    "seqspecs": [
93        "/configuration-files/IGVFFI3015GPXO/"
94    ],
95    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
96    "sequencing_platform": {
97        "@id": "/platform-terms/EFO_0022841/",
98        "status": "released",
99        "term_name": "Illumina NovaSeq X Plus"
100    },
101    "sequencing_run": 1,
102    "status": "preview",
103    "submitted_by": {
104        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
105        "title": "Ludwig Lab"
106    },
107    "submitted_file_name": "/data/cephfs-1/scratch/groups/ludwig/Josch/IGVF_aging_fastq_final/SCT_2304513004_Y65F_mtMultiome_ATAC_S1_L001_R2_001.fastq.gz",
108    "summary": "R2 reads from sequencing run 1",
109    "upload_status": "validated",
110    "uuid": "d31c62b9-21f2-4932-ba0a-9d301045c5f8"
111}