IGVFFI2940KZXN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3832WNZH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G6_P011_L003_R1

md5sum

1ff6aa7efee487a31ab5b0eb4af48a1e

Content MD5sum

1a445866fa059557cb52dabc4426e2f6

File Size

4.3 GB

Submitted File Name

Multiome_ATAC_X012_G6_L006_P011_S16_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

133998907

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4152BKDQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples