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INDEXED
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SequenceFile
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IGVFFI2939VXUJ
IGVFFI2939VXUJ
released
validated
Json view
File Set
IGVFDS4866EOBI
(Parse SPLiT-seq)
Summary
R1 reads from sequencing run 4
File Format
fastq
Content Type
reads
md5sum
d6e0d3c878fe47d53f6bf42e04ae19c3
Content MD5sum
07c5f9deb4f85c8900e350e6021f959a
File Size
11 GB
Submitted File Name
igvf_010/nova2/igvf_010_B02_D_nova_N2_L004_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ali Mortazavi, UCI
(
HG012077
—
Ali Mortazavi
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
4
Flowcell ID
H7YTNDSX7
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
140
Read Count
146436041
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9053HKTX
MultiplexedSample
gastrocnemius
,
kidney
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7280HGJL
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.3 GB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8020WWPA
yaml
seqspec
seqspec of IGVFFI2939VXUJ, IGVFFI6464GRYZ
Ali Mortazavi, UCI
1.4 KB
validated