IGVFFI2934KNNM

released
validated
File Set
IGVFDS0591VNKJ(gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes)
Summary
R1 reads from sequencing run 3
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispri-grna-rep3-rep3-fastq-lane4-R1
md5sum
48419f4022c4ccb3b95f6183985d8bc7
Content MD5sum
ef2c3a715cc52edaf2345f38fbfb2879
File Size
2.3 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_2_T_cell_project_1/gRNA_CRISPRi_D3_S9_L004_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
3
Flowcell ID
HMCCWDSX3
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
26
Read Count
112616568

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
filtered feature barcode matrix
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Charles Gersbach, Duke
335 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2934KNNM, IGVFFI2219JWDR
Charles Gersbach, Duke
1.1 KB
validated

Attribution