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IGVFFI2925TWYD

released
validated
File Set
IGVFDS9581AWPV(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp4_rna_10x1_NGS3_i1
md5sum
f4f48ac855d0741a9cf1a7e402fc9276
Content MD5sum
67d98c60fdebc7f6bd7f830fa232bed7
File Size
2.7 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF4_McGinnis/GEX/FASTQ/GEX_1_S40_L007_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
2
Flowcell ID
225LGWLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
600269796

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
225 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2925TWYD, IGVFFI6518VSJY, IGVFFI3820QBBR, IGVFFI8222YBZL
Ansuman Satpathy, Stanford
1.4 KB
validated