IGVFFI2925HKVG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4662SOHV(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP020_G2_P064_L002_I1

md5sum

52ba4a7b8480e76a15f5b835904b70c1

Content MD5sum

1fb56be0c2a6f762e1103001c655024c

File Size

445 MB

Submitted File Name

Multiome_RNA_RP020_G2_L002_P064_S20_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223H55LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

75487494

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9612VWVL

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples