IGVFFI2914SEZO

released
validated
File Set
IGVFDS5533XJRU(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S2_R1
md5sum
c924c3d75f69a7016e581b9ba5f5756b
Content MD5sum
a063dc1f402b8dcc1c95b542ee849e3a
File Size
220 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L363_S4_L002_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Lane
2
Illumina Read Type
R1
Average Read Length
28
Read Count
8889044

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2914SEZO, IGVFFI0675WIPQ, IGVFFI1192NXTI
Jesse Engreitz, Stanford
1.2 KB
validated

Attribution