IGVFFI2905AIKP

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2905AIKP/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2905AIKP",
10    "aliases": [
11        "jesse-engreitz:THP1-PPIF_promoter_lentiMPRA_BioRep2_RNA_BarcodeSequencing_R3"
12    ],
13    "assay_titles": [
14        "lentiMPRA"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011972/",
19        "component": "functional characterization"
20    },
21    "content_md5sum": "bce74e7f083462c1be9fa76b9d45450d",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2024-11-23T01:11:28.560425+00:00",
25    "description": "Barcode Read 2",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS9928OZTX/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS9928OZTX",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002675/",
38            "term_name": "massively parallel reporter assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/in-vitro-systems/IGVFSM9869SECP/",
44                "@type": [
45                    "InVitroSystem",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM9869SECP",
51                "classifications": [
52                    "cell line"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/EFO_0001253/",
57                        "status": "released",
58                        "term_name": "THP-1"
59                    }
60                ],
61                "status": "preview",
62                "summary": "Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "preview",
67        "summary": "lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus"
68    },
69    "file_size": 326147813,
70    "gene_list_for": [],
71    "href": "/sequence-files/IGVFFI2905AIKP/@@download/IGVFFI2905AIKP.fastq.gz",
72    "illumina_read_type": "R2",
73    "input_file_for": [
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76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/jesse-engreitz/",
79        "title": "Jesse Engreitz, Stanford"
80    },
81    "loci_list_for": [],
82    "maximum_read_length": 15,
83    "md5sum": "6113a7f81fef5cca1844ca1e45feea67",
84    "mean_read_length": 15,
85    "minimum_read_length": 15,
86    "quality_metrics": [],
87    "read_count": 21699758,
88    "s3_uri": "s3://igvf-files/2024/11/23/890d10c4-82b5-4657-8187-c014cdc6caea/IGVFFI2905AIKP.fastq.gz",
89    "schema_version": "15",
90    "seqspecs": [],
91    "sequencing_platform": {
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93        "status": "released",
94        "term_name": "Illumina NextSeq 550"
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96    "sequencing_run": 1,
97    "status": "preview",
98    "submitted_by": {
99        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
100        "title": "Michael Montgomery"
101    },
102    "submitted_file_name": "PPIF3_R2_RNA_S8_R3_001.fastq.gz",
103    "summary": "R2 reads from sequencing run 1",
104    "upload_status": "validated",
105    "uuid": "890d10c4-82b5-4657-8187-c014cdc6caea"
106}