IGVFFI2899KSHQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5954SSGR(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X027_G3_P026_L002_R1

md5sum

b6627d0873138fa45c68fc6c2ae4377c

Content MD5sum

85d7d0f4a185fd60d0a342b32a143d19

File Size

5.3 GB

Submitted File Name

Multiome_RNA_X027_G3_L003_P026_S12_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

257070790

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3694DWTC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples