IGVFFI2892NLVL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2695QSNJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G6_P007_L003_R1

md5sum

2727b3a247279711efce9e8eef56517c

Content MD5sum

b3601bff3ffa0a33761304fd8da92dcb

File Size

12 GB

Submitted File Name

Multiome_ATAC_X010_G6_L006_P007_S34_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

232610855

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3084IVUH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples