IGVFFI2872BDYW

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI2872BDYW/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2872BDYW",
    "aliases": [
        "jay-shendure:sc_rep_devCRE_mEBs_oBC_CS1_repB_reseq_10Xlane2_R2"
    ],
    "assay_titles": [
        "MPRA (scQer)"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "097fbd7027c29a650db620d584a6e05b",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-09T00:59:20.387890+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS8758JSUK/",
        "accession": "IGVFDS8758JSUK",
        "file_set_type": "circularized RNA barcode detection",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM4704LAYE/",
                "accession": "IGVFSM4704LAYE",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0004038/",
                        "status": "released",
                        "term_name": "mouse embryonic stem cell"
                    }
                ],
                "status": "released",
                "summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 transfected with a reporter library",
                "targeted_sample_term": {
                    "@id": "/sample-terms/UBERON_0014374/",
                    "status": "released",
                    "term_name": "embryoid body"
                },
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci"
    },
    "file_size": 786487537,
    "flowcell_id": "AAANJV7HV",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI2872BDYW/@@download/IGVFFI2872BDYW.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/tabular-files/IGVFFI2410QRVN/",
        "/tabular-files/IGVFFI0929WRXO/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "lane": 2,
    "loci_list_for": [],
    "maximum_read_length": 20,
    "md5sum": "c95e85851fcc850a6cf3cd98eb8f273c",
    "mean_read_length": 20,
    "minimum_read_length": 20,
    "read_count": 46849719,
    "release_timestamp": "2024-06-27T00:41:47.246099+00:00",
    "s3_uri": "s3://igvf-files/2023/12/09/14940e7b-1d2e-490d-a4bb-abd0dbaef2a7/IGVFFI2872BDYW.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI2397EDXJ/"
    ],
    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_repB_lane2_reseq_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "14940e7b-1d2e-490d-a4bb-abd0dbaef2a7"
}