IGVFFI2864SWSP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0007PGZB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G4_P058_L001_R1

md5sum

03b7eb014bf61c2ba198eb30aeb98f8d

Content MD5sum

e8ce35d6fc93969eff02877fd4e8f8be

File Size

1.4 GB

Submitted File Name

Multiome_RNA_RP010_G4_L004_P058_S20_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74482852

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3126EQPY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples