IGVFFI2860XBWO

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2860XBWO/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2860XBWO",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "95ac54ebb2c21ff3a8a113ce08c33282",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-11T01:09:29.911791+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS6826OTBD/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS6826OTBD",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "data_use_limitation_summaries": [
37            "no certificate"
38        ],
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM6007NOYG/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM6007NOYG",
49                "classifications": [
50                    "tissue",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0000473/",
58                        "status": "released",
59                        "term_name": "testis"
60                    },
61                    {
62                        "@id": "/sample-terms/UBERON_0000992/",
63                        "status": "released",
64                        "term_name": "ovary"
65                    },
66                    {
67                        "@id": "/sample-terms/UBERON_0000993/",
68                        "status": "released",
69                        "term_name": "oviduct"
70                    },
71                    {
72                        "@id": "/sample-terms/UBERON_0001301/",
73                        "status": "released",
74                        "term_name": "epididymis"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0002369/",
78                        "status": "released",
79                        "term_name": "adrenal gland"
80                    }
81                ],
82                "status": "released",
83                "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
84                "taxa": "Mus musculus",
85                "treatments": []
86            }
87        ],
88        "status": "released",
89        "summary": "Parse SPLiT-seq"
90    },
91    "file_size": 11039652711,
92    "flowcell_id": "H2W3JDSX7",
93    "gene_list_for": [],
94    "href": "/sequence-files/IGVFFI2860XBWO/@@download/IGVFFI2860XBWO.fastq.gz",
95    "illumina_read_type": "R2",
96    "input_file_for": [
97        "/matrix-files/IGVFFI0951CERX/"
98    ],
99    "integrated_in": [],
100    "lab": {
101        "@id": "/labs/ali-mortazavi/",
102        "title": "Ali Mortazavi, UCI"
103    },
104    "lane": 3,
105    "loci_list_for": [],
106    "maximum_read_length": 86,
107    "md5sum": "69fbda9adb5157062241d2285026feec",
108    "mean_read_length": 86,
109    "minimum_read_length": 86,
110    "quality_metrics": [],
111    "read_count": 302045757,
112    "read_names": [
113        "Read 2"
114    ],
115    "release_timestamp": "2025-04-19T00:32:10.716232+00:00",
116    "s3_uri": "s3://igvf-files/2023/10/11/a17ae162-1349-4f78-a390-bdec7350059b/IGVFFI2860XBWO.fastq.gz",
117    "schema_version": "15",
118    "seqspecs": [
119        "/configuration-files/IGVFFI6058HEBX/"
120    ],
121    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
122    "sequencing_platform": {
123        "@id": "/platform-terms/EFO_0008637/",
124        "status": "released",
125        "term_name": "Illumina NovaSeq 6000"
126    },
127    "sequencing_run": 3,
128    "status": "released",
129    "submitted_by": {
130        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
131        "title": "Diane Trout"
132    },
133    "submitted_file_name": "igvf_008/nova1/igvf_008_B03_D_nova_N1_L003_R2.fastq.gz",
134    "summary": "R2 reads from sequencing run 3",
135    "upload_status": "validated",
136    "uuid": "a17ae162-1349-4f78-a390-bdec7350059b"
137}