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IGVFFI2845PDJF

released
validated
File Set
IGVFDS8248GGOY(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 256
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2071_R1
bradley-bernstein:SS-LS_256_R1
buenrostro-bernstein:SS-LS_2071_R1
buenrostro-bernstein:SS-LS_256_R1
md5sum
a2b4bf5cceb32d6d42b8806012aba392
Content MD5sum
6b19072ed549cad993d07759599ca414
File Size
538 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-200_L1_SS-PKR-131_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
256
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
16550461

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
924 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2845PDJF, IGVFFI3616NUWL
Jason Buenrostro, Broad
1.2 KB
validated