IGVFFI2843PGLR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6638LYXU(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G7_P077_L006_R2

md5sum

0c9e65406ede9a766ced6dc63d74af28

Content MD5sum

db26883bc0cc8cfe7b4a346094400c78

File Size

1.0 GB

Submitted File Name

Multiome_ATAC_RP028_G7_L007_P077_S25_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58360636

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3393RSBM

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples