IGVFFI2834QQYS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5571QAYO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G3_P043_L006_R2

md5sum

d163fddf2905959535f45b1c8fb28019

Content MD5sum

5af48e4f39c5e10ad85d857e5ccc3ae2

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_X042_G3_L003_P043_S21_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63136761

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3739CWYU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples