IGVFFI2818ULXX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8552WQEE(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X028_G5_P028_L004_I1

md5sum

149abc9ac56fdadc424c7cd31fa72f09

Content MD5sum

59b932535ca470997ef8133da6cc5fe1

File Size

1.9 GB

Submitted File Name

Multiome_RNA_X028_G5_L005_P028_S22_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

299287421

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4526FRYV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples