IGVFFI2811SWVK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0932PWSD(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G7_P025_L001_I1

md5sum

cadcc84c83c9e9d583568146c175f20a

Content MD5sum

fe240ca87479e9a7fd6fe2d53a8fb776

File Size

889 MB

Submitted File Name

Multiome_ATAC_X026_G7_L007_P025_S8_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

112348709

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8499MYWL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples