IGVFFI2787LVNZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2028XESA(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G5_P055_L001_I1

md5sum

30a40e8a246238a7eb35d0f2d8769e06

Content MD5sum

773f2f32d5de7a97a8c66081cdffbc4f

File Size

376 MB

Submitted File Name

Multiome_ATAC_RP005_G5_L005_P055_S1_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50018587

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1655YUWG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples