IGVFFI2786XGID

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3732KKVV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G6_P059_L008_R1

md5sum

41035d83b8cd080d0ee7529af8ff684e

Content MD5sum

543721a422d573236b2f4d20a15e35de

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP012_G6_L006_P059_S86_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

61836167

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5046SGAL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples