IGVFFI2786NZFH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8806FBIC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G5_P029_L001_I1

md5sum

9db0c155ef92758bef8fbf245cd050dd

Content MD5sum

c7d14b8b0e74f2c12cf5cd9b6a11bb07

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X029_G5_L005_P029_S3_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

203676586

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2386YVCC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples