IGVFFI2767PVEC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7653EYZX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X039_G3_P039_L003_R1

md5sum

11392b8787ff7a48ef49033b665f3cee

Content MD5sum

037ee3fa6c4dd3dfb964b73a25c1d65c

File Size

7.4 GB

Submitted File Name

Multiome_ATAC_X039_G3_L003_P039_S25_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

239763143

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1761LAJP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples