IGVFFI2755SAHO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8899IQNI(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G4_P016_L004_R2

md5sum

2b003c40291f8d3ae56567f972f41f41

Content MD5sum

5594ecd26127d5acc538aa61f999fdf3

File Size

11 GB

Submitted File Name

Multiome_RNA_X016_G4_L012_P016_S4_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

235896416

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1455JWDF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples