IGVFFI2754KDRE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2538KOXA(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G7_P045_L001_I1

md5sum

491f461fabfb1870d0348eadf23f0605

Content MD5sum

ea60a5127f66ec70c0b6faa35ae11c61

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X044_G7_L007_P045_S3_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

233245279

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7413MASU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples