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INDEXED
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SequenceFile
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IGVFFI2750KMAK
IGVFFI2750KMAK
released
validated
Json view
File Set
IGVFDS7161RJGI
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x6_NGS4_i1
md5sum
c16129dd0d907c0b8290c3f7a43b1a8d
Content MD5sum
3407e3fcce0e9488de8acae30ddcb19c
File Size
1.4 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L006_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
196403996
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5574TAPU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5085ZLUQ
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.8 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI1130KOFA
yaml
seqspec
seqspec of IGVFFI2750KMAK, IGVFFI6025OIFX, IGVFFI3664OPBX, IGVFFI8352SPBW
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford