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INDEXED
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SequenceFile
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IGVFFI2750CTPC
IGVFFI2750CTPC
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8758TSKY
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X047_G3_P048_L004_I2
md5sum
4e26c7315339a41fd72731cb9f41d42b
Content MD5sum
a8a42004d71fd49a7efa81add758cde5
File Size
2.2 GB
Submitted File Name
Multiome_RNA_X047_G3_L003_P048_S23_L004_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5VKTDSX7
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I2
Average Read Length
10
Read Count
351061239
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0045HDEA
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples