IGVFFI2724AGJB

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2724AGJB/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2724AGJB",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_4383_R1"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "content_md5sum": "6ba1e3398cf5e78cba87f1914362e2b8",
22    "content_type": "reads",
23    "controlled_access": true,
24    "creation_timestamp": "2024-08-20T15:30:39.457588+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS5607LMEW/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS5607LMEW",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0002764/",
37            "term_name": "single-cell ATAC-seq"
38        },
39        "controlled_access": true,
40        "data_use_limitation_summaries": [
41            "GRU"
42        ],
43        "file_set_type": "experimental data",
44        "samples": [
45            {
46                "@id": "/in-vitro-systems/IGVFSM9310VRCN/",
47                "@type": [
48                    "InVitroSystem",
49                    "Biosample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM9310VRCN",
54                "classifications": [
55                    "cell line",
56                    "pooled cell specimen"
57                ],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/EFO_0004905/",
61                        "status": "released",
62                        "term_name": "induced pluripotent stem cell"
63                    }
64                ],
65                "status": "released",
66                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 207)",
67                "taxa": "Homo sapiens"
68            }
69        ],
70        "status": "released",
71        "summary": "single-cell ATAC-seq (SHARE-seq)"
72    },
73    "file_size": 3256493074,
74    "flowcell_id": "H75F7DSX5",
75    "gene_list_for": [],
76    "href": "/sequence-files/IGVFFI2724AGJB/@@download/IGVFFI2724AGJB.fastq.gz",
77    "illumina_read_type": "R1",
78    "input_file_for": [],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/jason-buenrostro/",
82        "title": "Jason Buenrostro, Broad"
83    },
84    "loci_list_for": [],
85    "maximum_read_length": 150,
86    "md5sum": "4d42efdde21fcf8d5fb1ee42dd8dce41",
87    "mean_read_length": 150,
88    "minimum_read_length": 150,
89    "quality_metrics": [],
90    "read_count": 51206148,
91    "read_names": [
92        "Read 1"
93    ],
94    "release_timestamp": "2025-04-22T04:08:50.818931+00:00",
95    "s3_uri": "s3://igvf-restricted-files/2024/08/20/a777aca8-09a6-4fcc-89f0-2dfa58cb6180/IGVFFI2724AGJB.fastq.gz",
96    "schema_version": "15",
97    "seqspecs": [
98        "/configuration-files/IGVFFI5892CRNB/"
99    ],
100    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
101    "sequencing_platform": {
102        "@id": "/platform-terms/EFO_0008637/",
103        "status": "released",
104        "term_name": "Illumina NovaSeq 6000"
105    },
106    "sequencing_run": 4383,
107    "status": "released",
108    "submitted_by": {
109        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
110        "title": "Siddarth Wekhande"
111    },
112    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-555_L2_SS-PKR-207_SS-V1-1st-THIRD_R1.fastq.gz",
113    "summary": "R1 reads from sequencing run 4383",
114    "upload_status": "validated",
115    "uuid": "a777aca8-09a6-4fcc-89f0-2dfa58cb6180"
116}