IGVFFI2694WTLE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0688NEEC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP029_G8_P077_L003_R2

md5sum

472cdaec8357dd6447b401a28b1284e4

Content MD5sum

44b95b779d4acf8d73c93313fe6c3169

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_RP029_G8_L008_P077_S34_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72727197

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9143IXZW

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples