IGVFFI2692TNWT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3970UULA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G1_P065_L005_R1

md5sum

5eab8080ac4af856e5bdc2048e7558bd

Content MD5sum

b2635c66a4c1d4b67dd67f3b0c4da399

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X050_G1_L001_P065_S31_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62052704

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1164RFEZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples