IGVFFI2684TRUX

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2684TRUX/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2684TRUX",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8347_R2"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "c48fc5be77b535da0104a9c2abd801de",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-05T17:57:55.900323+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS1861QPYY/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS1861QPYY",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/tissues/IGVFSM5470EUSZ/",
44                "@type": [
45                    "Tissue",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM5470EUSZ",
51                "classifications": [
52                    "tissue"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/NTR_0000646/",
57                        "status": "released",
58                        "term_name": "left cerebral cortex"
59                    }
60                ],
61                "status": "released",
62                "summary": "Mus musculus B6J (male) left cerebral cortex tissue (cellular sub pool: SS-PKR 576)",
63                "taxa": "Mus musculus"
64            }
65        ],
66        "status": "released",
67        "summary": "single-cell ATAC-seq (SHARE-seq)"
68    },
69    "file_size": 4609004333,
70    "flowcell_id": "22V3MJLT3",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI2684TRUX/@@download/IGVFFI2684TRUX.fastq.gz",
73    "illumina_read_type": "R2",
74    "input_file_for": [
75        "/alignment-files/IGVFFI2276XCWY/",
76        "/tabular-files/IGVFFI3752MAME/"
77    ],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/jason-buenrostro/",
81        "title": "Jason Buenrostro, Broad"
82    },
83    "loci_list_for": [],
84    "maximum_read_length": 199,
85    "md5sum": "6ed147a3bdddfcfc6186e47cd1867641",
86    "mean_read_length": 199,
87    "minimum_read_length": 199,
88    "quality_metrics": [],
89    "read_count": 82871833,
90    "read_names": [
91        "Read 2",
92        "Barcode index"
93    ],
94    "release_timestamp": "2025-03-28T21:21:30.681578+00:00",
95    "s3_uri": "s3://igvf-files/2025/03/05/e0cbb798-e727-4643-855b-ac5889557b29/IGVFFI2684TRUX.fastq.gz",
96    "schema_version": "15",
97    "seqspecs": [
98        "/configuration-files/IGVFFI7998CUEA/"
99    ],
100    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
101    "sequencing_platform": {
102        "@id": "/platform-terms/EFO_0022840/",
103        "status": "released",
104        "term_name": "Illumina NovaSeq X"
105    },
106    "sequencing_run": 8347,
107    "status": "released",
108    "submitted_by": {
109        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
110        "title": "Siddarth Wekhande"
111    },
112    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2233_L8_SS-PKR-576_SS-V1-LEFT-HALF_R2.fastq.gz",
113    "summary": "R2 reads from sequencing run 8347",
114    "upload_status": "validated",
115    "uuid": "e0cbb798-e727-4643-855b-ac5889557b29"
116}