IGVFFI2678GPVM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6703RFLO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP017_G1_P063_L005_R1

md5sum

7051c0df37894a30d49327fda9e2e9df

Content MD5sum

dd092f29d31245f63edbe1dddd44643f

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP017_G1_L001_P063_S25_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52525576

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0214EVMC

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples