IGVFFI2675NGGL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2943LQHU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G3_P061_L004_I1

md5sum

5ff090e3535897b3b61b2e2fbce1d923

Content MD5sum

251b938b21a7f4fb3f2b2f45a7d2435e

File Size

520 MB

Submitted File Name

Multiome_ATAC_RP014_G3_L003_P061_S11_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68195698

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4901QTFI

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples