IGVFFI2665OBWB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8666KHZN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G2_P059_L008_R3

md5sum

009bc5d804aa352db08150403c55b866

Content MD5sum

a04ca8924286ddd57c592eed6274480f

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_RP011_G2_L002_P059_S74_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74508303

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9347ZBKI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples