IGVFFI2657JLNM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6045MTVX(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G3_P075_L005_I1

md5sum

0f337fc4da8a0f30b370d17b9390d2a3

Content MD5sum

1739a019c473a65a9d315f842986263b

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP028_G3_L003_P075_S35_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

140683519

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9948JMCE

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples