IGVFFI2657DSPQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2240MOEK(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G7_P059_L006_R2

md5sum

2f4b9c59c1ed3bb977e94422c8933b0f

Content MD5sum

cbcec58d95949efeadab28ad9aa9431d

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_RP010_G7_L007_P059_S71_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68308882

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9956HBLE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples