IGVFFI2655UDCG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6958IETF(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP031_G7_P080_L007_R1

md5sum

604ad1f86ff4010f953ed45801bc6c5f

Content MD5sum

9f8cc5eb21f711e25faa9642745c1bed

File Size

13 GB

Submitted File Name

Multiome_RNA_RP031_G7_L007_P080_S43_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

138511824

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0980JQZM

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples