IGVFFI2648SHGO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1480DIMC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G1_P043_L006_R2

md5sum

44843fc43b910968020ce8754acdd125

Content MD5sum

4595cf7e6c996be573841dd7fe31852e

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_X044_G1_L001_P043_S35_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

85140847

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2720AOAW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples