IGVFFI2646BBJU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6993PVUO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G6_P055_L003_I1

md5sum

4a1a6e07424d097e79c4b2b5397fd338

Content MD5sum

8e296605469e1026b41109e82be8e37f

File Size

553 MB

Submitted File Name

Multiome_ATAC_RP005_G6_L006_P055_S2_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

76467235

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8050BLFH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples