IGVFFI2641JBFI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6345JTFM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G2_P065_L008_R3

md5sum

d3c32e0767b474dee0a0303d5bd286bf

Content MD5sum

80262da0a185fe04e6a0398b2b213d4a

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_X050_G2_L002_P065_S32_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70171104

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8296KGSW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples