IGVFFI2637SQGP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8837ROGQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G8_P013_L001_R1

md5sum

06d6800991aba76935030df8fc6953aa

Content MD5sum

d63a77d3c15bc34cf546250758438dba

File Size

431 MB

Submitted File Name

Multiome_ATAC_X015_G8_L008_P013_S14_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

13224985

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9878TZLL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples