IGVFFI2624KJTS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2462EACJ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X027_G1_P026_L002_R1

md5sum

fa6f93deb1a50a1cbf2cade5aa541b2f

Content MD5sum

15b264e8e8ff08cbeed5d4d6eced5dc3

File Size

4.9 GB

Submitted File Name

Multiome_RNA_X027_G1_L001_P026_S10_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

236412386

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2801FMBF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples