IGVFFI2618NNTO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3083RFCQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G1_P041_L001_R1

md5sum

38d2219be05e05284651c6fa08beb856

Content MD5sum

aea2eba5eb7e75486c88e59d10d185ab

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_X041_G1_L001_P041_S11_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

79909452

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1990PUGQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples