IGVFFI2612BATS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6211NECG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G1_P027_L003_R1

md5sum

aeb01b532ff6ef1ff0422c5e7374d083

Content MD5sum

7e593d484a2f76e39edc95f5192ab073

File Size

7.9 GB

Submitted File Name

Multiome_ATAC_X029_G1_L001_P027_S26_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

257609119

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9119FXQL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples