IGVFFI2608VPFF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6570CCTQ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP026_G4_P076_L006_R1

md5sum

079671918406c5bd1b937e7cf67a9a0c

Content MD5sum

cc71b02c82268259e6b7ff25fbc33fac

File Size

20 GB

Submitted File Name

Multiome_RNA_RP026_G4_L004_P076_S44_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19UBCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

218449056

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1367EGUO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples