IGVFFI2606BAXU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9478NMMZ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP005_G4_P054_L005_I1

md5sum

131dbfd07cf5a14eda5d8ab49018bc6d

Content MD5sum

5ecf5a6758a106f6d8d162244b06a584

File Size

342 MB

Submitted File Name

Multiome_RNA_RP005_G4_L004_P054_S39_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56237351

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3046HYHX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples